PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077666.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 1087aa    MW: 119933 Da    PI: 6.6382
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077666.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.55.2e-23132233199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  XP_011077666.1 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLVAGDSVLFI--RDE 222
                     99*****************************96555444..8************************************************..568 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l+++++r+
  XP_011077666.1 223 KQQLLLGIRRA 233
                     8889****997 PP

2Auxin_resp119.13.4e-39258341183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_011077666.1 258 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 341
                     79******************************998669********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-43122261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-41123247IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-20131223No hitNo description
PROSITE profilePS5086312.083132234IPR003340B3 DNA binding domain
SMARTSM010191.6E-23132234IPR003340B3 DNA binding domain
PfamPF023624.3E-21132233IPR003340B3 DNA binding domain
PfamPF065071.6E-34258341IPR010525Auxin response factor
PROSITE profilePS5174527.7759751059IPR000270PB1 domain
PfamPF023091.1E-69761060IPR033389AUX/IAA domain
SuperFamilySSF542771.28E-69881053No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1087 aa     Download sequence    Send to blast
MKTPTSGTGT LPGNASAAEG VKKSINGELW QACAGPLVNL PAAGTHVVYF PQGHSEQVAA  60
SMKKDVDAQI PNYPNLPAKL LCLLHNVTLH ADLETDEVYA QMTLQPVPSF DKEALLRSDL  120
SMKANKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFTMQPPAQ ELVARDLHDN  180
VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL VAGDSVLFIR DEKQQLLLGI RRANRQPPNL  240
SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVIPLAKYYK AVCSNQISLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESTAG ERRNRVSIWE  360
IEPVTAPFFI CPTPPFFRSK RXXXNYYADD DSSDLDSLFR RTMPWLGDEF GLRDPQALPG  420
LSLVQWMNMQ QNSSLSNSMQ PNYVNPLPSS LLQNAAGTDI SRQLGLPGTQ ISQHNNLQFN  480
AQRPNQPVQQ LDQLQKLPSS TLSPLSSITQ PQQQLTDVAQ PPRQSLVGQN LPASQVPSQI  540
LQSQSPIQAQ NVLQQQQSLV NHQLQRNLSQ NLPQQQVLSH SHQQNLMPSQ TPDHLSQQLQ  600
MPDNQIQLQL LQKLHQQQQL LLHQQPGMQQ SSQLTQLQDQ QKQLLDIPPN FPRSTAMSQL  660
MDSSQATSSM HPQSHVTGRE MTGNNSQTNL RFAQPPKQQK LQQSGILSEL PGHVGSTLNX  720
GGPSAVTDDV PSCSTSPSTN NCPNVGQSIT NGRNHRATTM VDEIAQSSVA RLNSGGLEPM  780
SSNSNLVQDL QQNSDVKPSL NISKSQNQGF FATQTYLNGV GTHIDYLDSS SSATSVLSQN  840
DGHIPQNNNS MSFNSQSMLF RDASQDGEAH GDPRNTVAFG ANIDNQLGMP MMPEPLITKN  900
MVGSGKDFSS NISSGGGLLS TYENPKESQA ELSPSMVSQS FGVPDMAFNS IDSTIHDGSF  960
MNTGAWAPPQ IPRMRTYTKV YKRGAVGRSI DITRYSGYDE LKQDLARRFG IEGQLEDRQR  1020
VGWKLVYVDH ENDVLLVGDD PWEEFVTCVR CIKILSPQEV QQMSLDGDFG NSVLPNQACS  1080
SSDNGVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1702236248388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077666.10.0PREDICTED: LOW QUALITY PROTEIN: auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A068UXX80.0A0A068UXX8_COFCA; Auxin response factor
STRINGSolyc07g016180.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19